STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLG_04550ABC transporter substrate binding protein precursor. (644 aa)    
Predicted Functional Partners:
SLG_04560
ABC transporter permease protein.
 
 
 0.975
SLG_04580
ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.971
SLG_04570
ABC transporter permease protein.
 
 
 0.962
SLG_04540
ABC transporter substrate binding protein precursor.
 
  
 
0.945
SLG_09220
ABC transporter substrate binding/permease protein.
   
 
 0.844
SLG_06960
Putative ABC transporter.
     
  0.716
SLG_16540
Putative ABC transporter substrate binding protein.
     
 0.683
SLG_37950
Putative ABC transporter ATP-binding protein.
     
 0.682
SLG_01100
Putative permease.
     
  0.675
SLG_01110
Putative permease.
     
  0.675
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.