Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SLG_05080Hypothetical protein. (380 aa)    
Predicted Functional Partners:
SLG_34110
Hypothetical protein.
 
    0.703
SLG_34140
Conserved hypothetical protein.
  
     0.540
SLG_06650
Putative glycosyltransferase.
 
  
 0.520
SLG_23880
Conserved hypothetical membrane protein.
  
     0.503
SLG_06660
Hypothetical protein.
  
   
 0.496
SLG_05090
Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.487
SLG_05100
Conserved hypothetical protein; Belongs to the UPF0145 family.
       0.478
SLG_10090
Putative bacteriocin processing/transport ATP-binding protein.
 
  
 0.439
SLG_02640
Hypothetical protein.
  
     0.433
SLG_08970
Conserved hypothetical protein.
  
     0.405
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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