Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SLG_06110HNH endonuclease family protein. (188 aa)    
Predicted Functional Partners:
SLG_06120
glutamyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.707
SLG_06130
Hypothetical protein.
       0.661
SLG_06140
Putative cobalamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
       0.583
SLG_22600
Modification methylase; Protein synonym:adenine-specific methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.583
SLG_06100
Putative M20A family peptidase.
       0.528
SLG_07380
Hypothetical protein.
  
    0.415
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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