STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLG_06950HlyD family secretion protein. (357 aa)    
Predicted Functional Partners:
SLG_06970
Putative ABC transporter permease protein.
 
  
 0.967
SLG_06960
Putative ABC transporter.
 
  
 0.963
SLG_06940
Efflux pump outer membrane protein.
  
 0.898
SLG_25690
Putative transporter.
  
 0.799
SLG_31490
TolC-like protein.
  
 0.799
SLG_03030
Putative ABC transporter ATP-binding protein.
 
  
 0.775
SLG_03020
Putative ABC transporter permease protein.
 
  
 0.732
SLG_03010
Putative ABC transporter permease protein.
 
  
 0.729
SLG_23680
Multidrug resistance protein A.
    
  0.675
SLG_07970
Heavy metal efflux system protein.
  
 0.652
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.