STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLG_06960Putative ABC transporter. (913 aa)    
Predicted Functional Partners:
SLG_06950
HlyD family secretion protein.
 
  
 0.963
SLG_06970
Putative ABC transporter permease protein.
 
 
0.928
SLG_09220
ABC transporter substrate binding/permease protein.
    
 0.873
SLG_38910
ABC transporter permease protein.
    
 0.840
SLG_10130
Putative capsule polysaccharide export inner-membrane protein.
    
 0.837
pstS
Putative phosphate transport system substrate binding protein precursor.
    
 0.826
SLG_37950
Putative ABC transporter ATP-binding protein.
    
  0.809
SLG_06940
Efflux pump outer membrane protein.
     
 0.797
SLG_14480
Putative ABC transporter.
  
 0.777
SLG_19440
Putative ABC transporter.
  
 0.777
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.