STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLG_07540Putative oxidoreductase. (554 aa)    
Predicted Functional Partners:
SLG_07520
Hypothetical protein.
 
  
 0.937
SLG_38610
Putative selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
 
 0.922
trxB
Thioredoxin reductase.
 
  
0.915
SLG_06080
Methionine-gamma-lyase.
   
 
 0.912
SLG_07530
Putative oxidoreductase.
 
 
 0.857
ahpC
Alkyl hydroperoxide reductase subunit C; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
 
 0.835
SLG_13880
Putative peroxiredoxin.
  
 
 0.835
cheA
Chemotaxis protein CheA.
   
 
 0.692
SLG_01090
Putative two-component system hybrid sensor and regulator.
  
 
 0.687
cobA
uroporphyrinogen-III C-methyltransferase; Protein synonym:SUMT.
  
  
 0.675
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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