STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLG_07730Hypothetical protein. (223 aa)    
Predicted Functional Partners:
ligJ
4-oxalomesaconate hydratase; Contributes to the degradation of lignin at the level of the protocatechuate 4,5-cleavage pathway. Catalyzes the hydration of the double bond of (3Z)-2-keto-4-carboxy-3-hexenedioate (KCH) to (4S)-4- carboxy-4-hydroxy-2-oxoadipate (CHA, also named (2S)-2-hydroxy-4- oxobutane-1,2,4-tricarboxylate). Is involved in the catabolism of both vanillate and syringate.
    
 0.905
SLG_07740
Putative aldolase.
 
    
0.826
ligY
2,2',3-trihydroxy-3'-methoxy-5, 5'-dicarboxybiphenyl meta-cleavage compound hydrolase.
 
   
 0.788
ligZ
2,2',3-trihydroxy-3'-methoxy-5, 5'-dicarboxybiphenyl dioxygenase.
 
     0.746
SLG_07830
Hypothetical protein; Belongs to the TPP enzyme family.
     
  0.650
SLG_08560
Thiamine pyrophosphate enzyme; Belongs to the TPP enzyme family.
     
  0.650
ilvI
Acetolactate synthase large subunit.
     
  0.650
ilvH
Acetolactate synthase small subunit.
     
  0.650
SLG_27660
Thiamine pyrophosphate enzyme; Belongs to the TPP enzyme family.
     
  0.650
SLG_07710
Major facilitator superfamily protein.
       0.459
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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