STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLG_07780MarR family transcriptional regulator. (215 aa)    
Predicted Functional Partners:
SLG_18470
Conserved hypothetical protein.
  
     0.766
SLG_09860
Putative MarR family transcriptional regulator.
  
     0.652
SLG_06360
4-hydroxyphenylpyruvate dioxygenase.
 
    0.583
ligX
2,2'-dihydroxy-3,3'-dimethoxy-5, 5'-dicarboxybiphenyl O-demethylase oxygenase subunit; Involved in the catabolism of 5,5'-dehydrodivanillate (DDVA), an intermediate in the biodegradation of lignin. Part of a three- component monooxygenase that catalyzes the O-demethylation of DDVA, leading to the formation of 2,2',3-trihydroxy-3'-methoxy-5,5'- dicarboxybiphenyl (OH-DDVA).
 
     0.582
SLG_07790
Aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.556
SLG_27260
MarR family transcriptional regulator.
  
     0.518
SLG_12450
Conserved hypothetical protein.
 
     0.453
SLG_06390
Maleylacetoacetate isomerase.
 
     0.438
SLG_27860
MarR family transcriptional regulator.
  
     0.434
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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