STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ligFBeta-etherase; Lignin degradation enzyme. (257 aa)    
Predicted Functional Partners:
gshB
Glutathione synthase; Belongs to the prokaryotic GSH synthase family.
 
  
 0.918
SLG_23620
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.
  
 
 0.916
SLG_24760
Glutathione reductase (NADPH).
   
 0.911
SLG_23310
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
   
 
 0.906
ligD
C alpha-dehydrogenase; Catalyzes the C alpha dehydrogenation of arylglycerol-beta- aryl ether (C alpha alcohol type) (compound IV); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.867
ligE
Beta-etherase; Able to degrade various dimeric lignin compounds. Catalyzes the unique and reductive cleavage of arylglycerol-beta-aryl ether; Belongs to the GST superfamily.
 
   
 0.862
ligG
Glutathione S-transferase.
 
   
 0.801
gst-3
Glutathione S-transferase.
  
   
 0.785
ligP
Beta-etherase.
  
   
 0.752
gst
Glutathione S-transferase; Belongs to the GST superfamily.
 
   
 0.734
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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