Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SLG_09220ABC transporter substrate binding/permease protein. (525 aa)    
Predicted Functional Partners:
SLG_09210
ABC transporter ATP-binding protein.
 
 0.999
pstS
Putative phosphate transport system substrate binding protein precursor.
  
 
 0.879
SLG_06960
Putative ABC transporter.
    
 0.873
SLG_37950
Putative ABC transporter ATP-binding protein.
    
  0.872
SLG_14380
Putative ABC transporter permease protein.
    
  0.869
SLG_15780
Putative ABC transporter permease protein.
    
  0.868
SLG_10130
Putative capsule polysaccharide export inner-membrane protein.
     
  0.866
SLG_38910
ABC transporter permease protein.
     
  0.866
SLG_01110
Putative permease.
     
  0.865
SLG_01100
Putative permease.
     
  0.864
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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