Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SLG_09340Putative hydrolase. (557 aa)    
Predicted Functional Partners:
SLG_27300
Putative dioxygenase.
  
     0.729
SLG_11300
Putative dioxygenase.
  
     0.724
SLG_09440
Putative oxygenase.
  
     0.723
SLG_37540
Putative dioxygenase.
  
     0.723
SLG_12860
Conserved hypothetical protein.
  
     0.722
SLG_36640
Putative dioxygenase.
  
     0.722
SLG_27970
Putative dioxygenase.
  
     0.712
SLG_26380
Hypothetical protein.
  
     0.707
lsdA
Lignostilbene alpha,beta-dioxygenase.
  
     0.704
SLG_31230
Hypothetical protein.
  
     0.682
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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