STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLG_09520MarR family transcriptional regulator. (181 aa)    
Predicted Functional Partners:
SLG_09510
NAD-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.773
SLG_09530
Hypothetical protein.
       0.773
SLG_18470
Conserved hypothetical protein.
  
     0.759
SLG_27860
MarR family transcriptional regulator.
  
     0.719
SLG_09540
Hypothetical protein.
       0.701
SLG_09860
Putative MarR family transcriptional regulator.
  
     0.592
SLG_26340
MarR family transcriptional regulator.
  
     0.579
SLG_06360
4-hydroxyphenylpyruvate dioxygenase.
 
    0.564
SLG_09480
Choline dehydrogenase.
       0.559
SLG_09490
Hypothetical protein.
       0.559
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.