STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bkdA2Protein synonym:branched-chain alpha-keto acid dehydrogenase E1 component beta subunit. (339 aa)    
Predicted Functional Partners:
bkdA1
Protein synonym:branched-chain alpha-keto acid dehydrogenase E1 component alpha subunit.
 0.999
bkdB
Dihydrolipoyl transacylase; Protein synonym:branched-chain alpha-keto acid dehydrogenase E2 component.
 
 0.998
lpd
Protein synonym:branched-chain alpha-keto acid dehydrogenase E3 component.
 
 0.996
pdhA
Pyruvate dehydrogenase E1 component subunit alpha; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
 0.995
pdhA-2
Pyruvate dehydrogenase E1 component subunit alpha; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
 0.995
pdhD-2
Dihydrolipoamide dehydrogenase.
 
 0.975
pdhD
Dihydrolipoamide dehydrogenase.
 
 0.971
SLG_13460
Amino acid dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.938
ilvE
Branched-chain amino acid aminotransferase.
  
 0.918
pdhC
Pyruvate dehydrogenase E2 component; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
 0.914
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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