STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLG_09730acyl-CoA carboxylase beta chain; Protein synonym:carboxyltransferase. (533 aa)    
Predicted Functional Partners:
SLG_09720
acyl-CoA carboxylase alpha chain.
 0.994
SLG_09750
isovaleryl-CoA dehydrogenase.
 
 
 0.992
fadJ
Fatty oxidation complex alpha subunit; Protein synonym:3-hydroxyacyl-CoA dehydrogenase.
  
 0.969
SLG_15980
enoyl-CoA hydratase; Protein synonym:unsaturated acyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.928
SLG_06510
Biotin carboxylase.
 
 0.903
accC
acetyl-CoA carboxylase biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
 
 0.899
pccA
propionyl-CoA carboxylase alpha chain; Protein synonym:PCCase.
 
 0.793
SLG_09740
Hypothetical protein.
       0.790
SLG_09710
MaoC-like dehydratase.
 
  
 0.770
SLG_11230
4-hydroxy 2-oxovalerate aldolase.
 
 
 0.770
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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