Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SLG_11080Putative exonuclease. (331 aa)    
Predicted Functional Partners:
lig
DNA ligase.
 
 0.996
SLG_37750
Lhr-like helicase.
 
    0.813
SLG_37720
Hypothetical protein.
 
     0.803
SLG_07050
Hypothetical protein.
    
 0.801
SLG_32840
Hypothetical protein.
    
 0.801
SLG_10370
Putative DNA ligase.
 
 
 0.759
SLG_04290
Putative DNA ligase.
 
 
 0.757
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.712
SLG_11060
Putative two-component system hybrid sensor and regulator.
 
    0.612
cheR-2
Chemotaxis protein methyltransferase; This ORF product lacks a binding site (Asn residue) required for S-adenosyl-L-methionine binding.
 
     0.598
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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