Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SLG_11240IclR family transcriptional regulator. (239 aa)    
Predicted Functional Partners:
SLG_27680
IclR family transcriptional regulator.
  
     0.772
SLG_31430
IclR family transcriptional regulator.
  
     0.768
SLG_24970
IclR family transcriptional regulator.
  
     0.765
SLG_31450
IclR family transcriptional regulator.
  
     0.765
SLG_07570
Putative GntR family transcriptional regulator.
  
  
 0.699
SLG_11230
4-hydroxy 2-oxovalerate aldolase.
 
   
 0.614
SLG_11220
Aconitate hydratase; Protein synonym:aconitase.
       0.550
SLG_18900
Putative GntR family transcriptional regulator.
  
  
 0.494
SLG_09990
GntR family transcriptional regulator.
  
  
 0.467
SLG_18990
Conserved hypothetical protein.
  
  
 0.410
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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