Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SLG_12460Hypothetical protein. (147 aa)    
Predicted Functional Partners:
SLG_12440
Hypothetical protein.
       0.773
SLG_12450
Conserved hypothetical protein.
       0.773
SLG_12470
Putative oxidoreductase.
       0.773
SLG_12430
Major facilitator superfamily protein.
 
     0.667
SLG_12420
Major facilitator superfamily protein.
 
     0.579
ligR
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.547
SLG_00650
Hypothetical protein.
  
     0.467
SLG_23980
Tight adherence protein TadE.
  
     0.467
SLG_27340
Hypothetical protein.
  
     0.465
SLG_31170
TonB-dependent receptor-like protein.
  
     0.460
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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