STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLG_13620Putative response regulator receiver protein. (145 aa)    
Predicted Functional Partners:
SLG_07070
Hypothetical protein.
 
   
 0.655
rluB
Ribosomal large subunit pseudouridine synthase B; Protein synonym:rRNA pseudouridylate synthase B; protein synonym:rRNA-uridine isomerase B; Belongs to the pseudouridine synthase RsuA family.
       0.608
SLG_13600
Putative methyltransferase.
       0.597
ampG
Protein AmpG.
       0.583
SLG_01090
Putative two-component system hybrid sensor and regulator.
 
   
 0.550
cheA
Chemotaxis protein CheA.
     
 0.475
SLG_24640
Putative response regulator receiver protein.
     
 0.474
SLG_10450
Putative signaling protein.
 
   
 0.435
SLG_14080
Hypothetical protein.
 
   
 0.421
SLG_10020
CheY-like response regulator.
  
   
 0.406
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.