STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspCPutative general secretion pathway protein C. (289 aa)    
Predicted Functional Partners:
gspD
General secretion pathway protein D.
 
 
 0.993
gspI
General secretion pathway protein I.
 
  
 0.961
gspL
Putative general secretion pathway protein L.
 
   
 0.958
gspJ
General secretion pathway protein J.
 
  
 0.955
gspG
General secretion pathway protein G.
 
  
 0.954
gspF
General secretion pathway protein F.
 
  
 0.951
gspK
General secretion pathway protein K.
 
  
 0.951
gspE
General secretion pathway protein E.
 
  
 0.946
gspH
General secretion pathway protein H.
 
     0.913
gspM
General secretion pathway protein M.
     
 0.816
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.