STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspCPutative general secretion pathway protein C. (289 aa)    
Predicted Functional Partners:
gspD
General secretion pathway protein D.
 
 
 0.997
gspI
General secretion pathway protein I.
 
  
 0.966
gspJ
General secretion pathway protein J.
 
  
 0.962
gspK
General secretion pathway protein K.
 
  
 0.962
gspF
General secretion pathway protein F.
 
  
 0.958
gspL
Putative general secretion pathway protein L.
 
   
 0.958
gspG
General secretion pathway protein G.
 
  
 0.956
gspE
General secretion pathway protein E.
 
  
 0.947
gspH
General secretion pathway protein H.
 
     0.913
gspM
General secretion pathway protein M.
     
 0.833
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.