STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SLG_16640Aromatic-ring-hydroxylating dioxygenase alpha subunit. (450 aa)    
Predicted Functional Partners:
SLG_16650
Aromatic-ring-hydroxylating dioxygenase beta subunit.
 
 0.999
ligV
Vanillin dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.914
SLG_28630
Glyoxalase-family protein.
 
  
 0.742
SLG_32620
Putative iron-sulfur protein.
 
     0.595
SLG_18370
Putative iron-sulfur protein.
 
     0.585
SLG_18730
Putative iron-sulfur protein.
 
     0.574
SLG_18530
Putative iron-sulfur protein.
 
     0.558
SLG_18880
Putative iron-sulfur protein.
  
     0.554
SLG_16630
Hypothetical protein.
       0.530
SLG_05220
Putative iron-sulfur protein.
 
     0.522
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.