Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SLG_20060Conserved hypothetical protein. (520 aa)    
Predicted Functional Partners:
SLG_20050
Hypothetical protein.
       0.781
SLG_20040
LinC-like SDR-family protein.
     
 0.778
crtB
Phytoene/squalene synthase.
 
  
 0.650
SLG_20070
Putative hydrolase.
       0.598
SLG_20080
LinC-like SDR-family protein.
     
 0.581
SLG_20090
Hypothetical protein.
       0.575
SLG_20100
Hypothetical protein.
       0.571
pcaC-2
4-carboxymuconolactone decarboxylase.
       0.571
SLG_20120
Putative hydrolase.
       0.564
SLG_20150
Putative cytochrome P450.
 
   
 0.542
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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