STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLG_22010Putative portal protein. (485 aa)    
Predicted Functional Partners:
SLG_22030
Putative phage-related protein.
 
   
 0.954
SLG_22000
Putative terminase large subunit.
 
   
 0.914
SLG_22050
Conserved hypothetical protein.
 
     0.879
SLG_22070
Conserved hypothetical protein.
 
     0.873
SLG_22040
Conserved hypothetical protein.
 
     0.832
SLG_22020
Hypothetical protein.
       0.773
SLG_22180
Putative phage tape measure protein.
 
     0.766
SLG_32170
Putative glycosyltransferase.
  
     0.763
SLG_20780
Hypothetical protein.
  
     0.715
SLG_19720
Conserved hypothetical protein.
  
     0.703
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.