STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLG_23980Tight adherence protein TadE. (219 aa)    
Predicted Functional Partners:
SLG_23960
Flp pilus assembly protein TadG.
 
     0.966
SLG_23970
Tight adherence protein TadE.
 
     0.966
SLG_23940
Hypothetical protein.
 
     0.882
cpaE
Flp pilus assembly protein ATPase.
 
  
 0.806
cpaD
Flp pilus assembly protein.
 
     0.781
SLG_03870
Hypothetical protein.
 
     0.767
SLG_33340
Hypothetical membrane protein.
  
     0.764
SLG_02440
Hypothetical protein.
  
     0.760
cpaB
Flp pilus assembly protein.
 
  
 0.758
cpaA
Flp pilus assembly protein protease.
 
  
 0.751
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.