Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SLG_26440Conserved hypothetical protein. (187 aa)    
Predicted Functional Partners:
SLG_26450
Conserved hypothetical protein.
       0.773
panE
Putative 2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
   
    0.695
ada
Protein synonym:regulatory protein of adaptative response.
  
  
 0.665
SLG_09150
Hypothetical protein.
  
     0.597
SLG_31000
Heavy metal resistance protein.
  
   
 0.453
SLG_02520
Hypothetical protein.
  
     0.421
chrB
Putative chromate resistance protein ChrB.
  
    0.416
SLG_04430
YapH-family protein.
  
     0.408
SLG_19910
Putative exported protein.
  
     0.408
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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