Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SLG_26510Hypothetical protein; Belongs to the SOS response-associated peptidase family. (215 aa)    
Predicted Functional Partners:
SLG_26500
Hypothetical protein.
 
     0.886
imuA-2
Protein ImuA.
 
     0.673
SLG_21690
Conserved hypothetical protein.
  
     0.538
SLG_22010
Putative portal protein.
  
     0.513
SLG_22070
Conserved hypothetical protein.
  
     0.478
SLG_12140
Conserved hypothetical protein.
  
     0.471
SLG_20780
Hypothetical protein.
  
     0.448
SLG_09100
Hypothetical protein.
  
     0.413
SLG_27390
Anti-sigma factor.
 
     0.410
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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