STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLG_26580Hypothetical protein. (361 aa)    
Predicted Functional Partners:
SLG_26590
Hypothetical protein.
 
   
 0.958
SLG_26570
Hypothetical protein.
 
    0.943
SLG_26600
Hypothetical protein.
       0.773
SLG_20190
Putative hydrolase.
  
  
 0.556
SLG_26610
Hypothetical protein.
       0.513
pheT
phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.504
pspF
Psp operon transcriptional activator.
     
 0.476
cobA
uroporphyrinogen-III C-methyltransferase; Protein synonym:SUMT.
  
  
 0.473
SLG_17730
NifU-like protein.
  
  
 0.467
SLG_31780
Hypothetical protein.
 
  
 0.444
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.