STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLG_28720Hypothetical protein. (269 aa)    
Predicted Functional Partners:
SLG_28730
Hypothetical protein.
       0.732
SLG_28740
Major facilitator superfamily protein.
       0.732
SLG_31320
Conserved hypothetical protein.
  
     0.655
tfdA-3
Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase.
 
     0.632
tfdA-4
Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase.
  
     0.584
SLG_12230
Hypothetical protein.
  
     0.558
SLG_38060
Hypothetical protein.
  
     0.547
SLG_12240
Hypothetical protein.
  
     0.539
SLG_27930
Conserved hypothetical protein.
  
     0.528
tfdA-2
Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase.
  
     0.526
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.