STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLG_30360Type IV secretory pathway TrbD component. (93 aa)    
Predicted Functional Partners:
SLG_30370
Conjugal transfer protein TrbC.
 
   
 0.954
SLG_30310
Conjugal transfer protein TrbF.
 
   
 0.953
SLG_30340
Conjugal transfer protein TrbJ.
 
   
 0.952
SLG_30350
Conjugal transfer protein TrbE.
 
   
 0.952
SLG_30300
Conjugal transfer protein TrbG.
 
   
 0.951
SLG_30320
Conjugal transfer protein TrbL.
 
   
 0.951
SLG_30290
Conjugal transfer protein TrbI.
 
   
 0.949
SLG_30280
Hypothetical protein.
 
     0.942
SLG_30380
Conjugal transfer protein TrbB.
 
   
 0.928
SLG_30430
Conjugal transfer protein TraG.
 
     0.832
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.