STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SLG_31270Beta-ketoadipate enol-lactone hydrolase. (258 aa)    
Predicted Functional Partners:
pcaC-2
4-carboxymuconolactone decarboxylase.
 
  
 0.992
pcaC
4-carboxymuconolactone decarboxylase.
  
  
 0.924
SLG_27270
Beta-ketoadipate enol-lactone hydrolase.
 
  
0.924
SLG_31320
Conserved hypothetical protein.
  
 
 0.912
SLG_28160
Putative alpha/beta hydrolase.
  
   
 0.735
SLG_31360
Conserved hypothetical protein.
  
   
 0.730
pdhB
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
 0.654
pdhB-2
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
 0.654
SLG_31260
Putative phthalate transporter.
       0.597
pobA
P-hydroxybenzoate 3-monooxygenase.
 
 
 0.540
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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