Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SLG_31380Hypothetical protein. (288 aa)    
Predicted Functional Partners:
SLG_31390
Conserved hypothetical protein.
       0.723
SLG_09780
Putative lipolytic enzyme.
  
     0.650
SLG_14130
Putative ABC transporter permease protein.
  
     0.584
SLG_31400
Hypothetical protein.
 
     0.582
SLG_08140
Putative xylanase.
  
     0.578
SLG_31420
Hypothetical protein.
     0.544
SLG_04410
Quinoprotein glucose dehydrogenase.
  
     0.517
SLG_31370
TonB-dependent receptor-like protein.
       0.464
SLG_25070
Putative arylsulfatase.
  
     0.433
SLG_11500
Putative hydrolase.
  
     0.425
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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