STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLG_34040Putative helicase. (916 aa)    
Predicted Functional Partners:
hslR
Putative heat shock protein 15.
 
     0.883
SLG_34010
Putative CarD family transcriptional regulator.
 
     0.739
SLG_34020
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.680
SLG_34050
Peptidase M23B family protein.
       0.656
SLG_37100
Cobalamin biosynthesis protein.
  
     0.621
SLG_29000
Putative N-formylglutamate amidohydrolase.
  
     0.618
atpF
ATP synthase B chain; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.614
SLG_37160
Conserved hypothetical protein.
  
     0.607
SLG_15770
Cell cycle regulator GcrA.
  
     0.590
SLG_34440
ATP synthase mitochondrial F1 complex assembly factor 2.
  
     0.588
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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