STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAV_LOCUS1697PHD-type domain-containing protein. (303 aa)    
Predicted Functional Partners:
NAV_LOCUS6224
WD_REPEATS_REGION domain-containing protein.
   
 0.979
NAV_LOCUS2232
Uncharacterized protein.
    
 
 0.971
NAV_LOCUS654
HDAC_interact domain-containing protein.
   
 
 0.954
NAV_LOCUS928
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.931
NAV_LOCUS2621
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.931
NAV_LOCUS5900
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.931
NAV_LOCUS4036
P53 domain-containing protein.
    
 0.842
NAV_LOCUS1620
TAF domain-containing protein.
    
 0.802
NAV_LOCUS8094
Uncharacterized protein.
    
 0.800
NAV_LOCUS7617
Bromo domain-containing protein.
    
 0.800
Your Current Organism:
Acanthocheilonema viteae
NCBI taxonomy Id: 6277
Other names: A. viteae, Dipetalonema viteae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.