STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAV_LOCUS92FCP1 homology domain-containing protein. (362 aa)    
Predicted Functional Partners:
NAV_LOCUS7348
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.939
NAV_LOCUS7463
LNS2 domain-containing protein.
    
 0.897
NAV_LOCUS7748
Uncharacterized protein.
   
 0.874
NAV_LOCUS2596
Uncharacterized protein.
    
 0.867
NAV_LOCUS3483
Signal peptidase complex catalytic subunit SEC11.
    
 0.864
NAV_LOCUS8642
Uncharacterized protein.
    
 0.863
NAV_LOCUS7029
General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.
   
 0.855
NAV_LOCUS7339
RPOLD domain-containing protein.
    
 0.853
NAV_LOCUS7206
RPOL4c domain-containing protein.
    
 0.838
NAV_LOCUS5241
Uncharacterized protein.
    
 0.821
Your Current Organism:
Acanthocheilonema viteae
NCBI taxonomy Id: 6277
Other names: A. viteae, Dipetalonema viteae
Server load: low (28%) [HD]