NAV_LOCUS2108 protein (Acanthocheilonema viteae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NAV_LOCUS2108

N-acetyltransferase domain-containing protein. (202 aa)

Predicted Functional Partners:

NAV_LOCUS4200

0.997

NAV_LOCUS6596

0.996

NAV_LOCUS8102

0.976

NAV_LOCUS7241

0.964

NAV_LOCUS9142

0.964

NAV_LOCUS7301

0.945

NAV_LOCUS5463

0.911

NAV_LOCUS2835

0.906

NAV_LOCUS4204

0.855

NAV_LOCUS1498

0.838

Your Current Organism:

Acanthocheilonema viteae

NCBI taxonomy Id: 6277
Other names: A. viteae, Dipetalonema viteae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NAV_LOCUS1498	NAV_LOCUS2108	A0A498S5E0	A0A498S6J6	Arrestin_C domain-containing protein.	N-acetyltransferase domain-containing protein.	0.838
NAV_LOCUS2108	NAV_LOCUS1498	A0A498S6J6	A0A498S5E0	N-acetyltransferase domain-containing protein.	Arrestin_C domain-containing protein.	0.838
NAV_LOCUS2108	NAV_LOCUS2835	A0A498S6J6	A0A498SHC5	N-acetyltransferase domain-containing protein.	CBFD_NFYB_HMF domain-containing protein.	0.906
NAV_LOCUS2108	NAV_LOCUS4200	A0A498S6J6	A0A498SHH9	N-acetyltransferase domain-containing protein.	Uncharacterized protein.	0.997
NAV_LOCUS2108	NAV_LOCUS4204	A0A498S6J6	A0A498SC40	N-acetyltransferase domain-containing protein.	SANT domain-containing protein.	0.855
NAV_LOCUS2108	NAV_LOCUS5463	A0A498S6J6	A0A498SB14	N-acetyltransferase domain-containing protein.	Uncharacterized protein.	0.911
NAV_LOCUS2108	NAV_LOCUS6596	A0A498S6J6	A0A498SPC4	N-acetyltransferase domain-containing protein.	N-acetyltransferase domain-containing protein.	0.996
NAV_LOCUS2108	NAV_LOCUS7241	A0A498S6J6	A0A498SKT2	N-acetyltransferase domain-containing protein.	Uncharacterized protein.	0.964
NAV_LOCUS2108	NAV_LOCUS7301	A0A498S6J6	A0A498SR27	N-acetyltransferase domain-containing protein.	Uncharacterized protein.	0.945
NAV_LOCUS2108	NAV_LOCUS8102	A0A498S6J6	A0A498SNH0	N-acetyltransferase domain-containing protein.	Uncharacterized protein.	0.976
NAV_LOCUS2108	NAV_LOCUS9142	A0A498S6J6	A0A498SR99	N-acetyltransferase domain-containing protein.	SGF29 C-terminal domain-containing protein.	0.964
NAV_LOCUS2835	NAV_LOCUS2108	A0A498SHC5	A0A498S6J6	CBFD_NFYB_HMF domain-containing protein.	N-acetyltransferase domain-containing protein.	0.906
NAV_LOCUS2835	NAV_LOCUS4204	A0A498SHC5	A0A498SC40	CBFD_NFYB_HMF domain-containing protein.	SANT domain-containing protein.	0.964
NAV_LOCUS2835	NAV_LOCUS7241	A0A498SHC5	A0A498SKT2	CBFD_NFYB_HMF domain-containing protein.	Uncharacterized protein.	0.881
NAV_LOCUS2835	NAV_LOCUS7301	A0A498SHC5	A0A498SR27	CBFD_NFYB_HMF domain-containing protein.	Uncharacterized protein.	0.863
NAV_LOCUS2835	NAV_LOCUS9142	A0A498SHC5	A0A498SR99	CBFD_NFYB_HMF domain-containing protein.	SGF29 C-terminal domain-containing protein.	0.881
NAV_LOCUS4200	NAV_LOCUS2108	A0A498SHH9	A0A498S6J6	Uncharacterized protein.	N-acetyltransferase domain-containing protein.	0.997
NAV_LOCUS4200	NAV_LOCUS6596	A0A498SHH9	A0A498SPC4	Uncharacterized protein.	N-acetyltransferase domain-containing protein.	0.996
NAV_LOCUS4200	NAV_LOCUS8102	A0A498SHH9	A0A498SNH0	Uncharacterized protein.	Uncharacterized protein.	0.965
NAV_LOCUS4204	NAV_LOCUS2108	A0A498SC40	A0A498S6J6	SANT domain-containing protein.	N-acetyltransferase domain-containing protein.	0.855