STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAV_LOCUS3852Uncharacterized protein. (259 aa)    
Predicted Functional Partners:
NAV_LOCUS2195
Uncharacterized protein.
  
 
 0.852
NAV_LOCUS164
PIG-P domain-containing protein.
     
 0.846
NAV_LOCUS614
Uncharacterized protein.
     
 0.846
NAV_LOCUS4607
Rhodanese domain-containing protein.
     
 0.846
NAV_LOCUS4752
tRNA-synt_1e domain-containing protein.
  
 
 0.838
NAV_LOCUS10246
Uncharacterized protein.
  
 
 0.838
NAV_LOCUS1496
6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
    
 0.824
NAV_LOCUS5698
DC_STAMP domain-containing protein.
    
  0.806
NAV_LOCUS4069
BcrAD_BadFG domain-containing protein.
    
 0.802
NAV_LOCUS3731
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
    
 0.802
Your Current Organism:
Acanthocheilonema viteae
NCBI taxonomy Id: 6277
Other names: A. viteae, Dipetalonema viteae
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