NAV_LOCUS2750 protein (Acanthocheilonema viteae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NAV_LOCUS2750

Uncharacterized protein. (314 aa)

Predicted Functional Partners:

NAV_LOCUS4177

0.994

NAV_LOCUS129

0.989

NAV_LOCUS5491

0.979

NAV_LOCUS5348

0.966

NAV_LOCUS5996

0.679

NAV_LOCUS7890

0.595

NAV_LOCUS1018

0.585

NAV_LOCUS3353

0.569

NAV_LOCUS2220

0.495

NAV_LOCUS6962

0.484

Your Current Organism:

Acanthocheilonema viteae

NCBI taxonomy Id: 6277
Other names: A. viteae, Dipetalonema viteae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NAV_LOCUS1018	NAV_LOCUS2750	A0A498SC91	A0A498S8C1	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	Uncharacterized protein.	0.585
NAV_LOCUS129	NAV_LOCUS2220	A0A498S1M6	A0A498SC20	HATPase_c domain-containing protein.	Uncharacterized protein.	0.452
NAV_LOCUS129	NAV_LOCUS2750	A0A498S1M6	A0A498S8C1	HATPase_c domain-containing protein.	Uncharacterized protein.	0.989
NAV_LOCUS129	NAV_LOCUS4177	A0A498S1M6	A0A498SCP2	HATPase_c domain-containing protein.	Uncharacterized protein.	0.921
NAV_LOCUS129	NAV_LOCUS5348	A0A498S1M6	A0A498SKQ4	HATPase_c domain-containing protein.	TPR_REGION domain-containing protein.	0.991
NAV_LOCUS129	NAV_LOCUS5491	A0A498S1M6	A0A498SFU5	HATPase_c domain-containing protein.	Uncharacterized protein.	0.990
NAV_LOCUS129	NAV_LOCUS5996	A0A498S1M6	A0A498SHG4	HATPase_c domain-containing protein.	Aha1_N domain-containing protein.	0.977
NAV_LOCUS129	NAV_LOCUS6962	A0A498S1M6	A0A498SQI2	HATPase_c domain-containing protein.	Uncharacterized protein.	0.791
NAV_LOCUS2220	NAV_LOCUS129	A0A498SC20	A0A498S1M6	Uncharacterized protein.	HATPase_c domain-containing protein.	0.452
NAV_LOCUS2220	NAV_LOCUS2750	A0A498SC20	A0A498S8C1	Uncharacterized protein.	Uncharacterized protein.	0.495
NAV_LOCUS2220	NAV_LOCUS4177	A0A498SC20	A0A498SCP2	Uncharacterized protein.	Uncharacterized protein.	0.571
NAV_LOCUS2220	NAV_LOCUS5491	A0A498SC20	A0A498SFU5	Uncharacterized protein.	Uncharacterized protein.	0.573
NAV_LOCUS2220	NAV_LOCUS5996	A0A498SC20	A0A498SHG4	Uncharacterized protein.	Aha1_N domain-containing protein.	0.697
NAV_LOCUS2750	NAV_LOCUS1018	A0A498S8C1	A0A498SC91	Uncharacterized protein.	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	0.585
NAV_LOCUS2750	NAV_LOCUS129	A0A498S8C1	A0A498S1M6	Uncharacterized protein.	HATPase_c domain-containing protein.	0.989
NAV_LOCUS2750	NAV_LOCUS2220	A0A498S8C1	A0A498SC20	Uncharacterized protein.	Uncharacterized protein.	0.495
NAV_LOCUS2750	NAV_LOCUS3353	A0A498S8C1	A0A498SHE7	Uncharacterized protein.	RBR-type E3 ubiquitin transferase.	0.569
NAV_LOCUS2750	NAV_LOCUS4177	A0A498S8C1	A0A498SCP2	Uncharacterized protein.	Uncharacterized protein.	0.994
NAV_LOCUS2750	NAV_LOCUS5348	A0A498S8C1	A0A498SKQ4	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.966
NAV_LOCUS2750	NAV_LOCUS5491	A0A498S8C1	A0A498SFU5	Uncharacterized protein.	Uncharacterized protein.	0.979