STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAV_LOCUS2286Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (129 aa)    
Predicted Functional Partners:
NAV_LOCUS2014
Nop domain-containing protein.
   
 0.999
NAV_LOCUS930
WD_REPEATS_REGION domain-containing protein.
   
 0.999
NAV_LOCUS6434
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.999
NAV_LOCUS8242
Uncharacterized protein.
   
 0.999
NAV_LOCUS8750
Nop domain-containing protein.
   
 0.999
NAV_LOCUS4783
Nop domain-containing protein.
    
 0.998
NAV_LOCUS805
Uncharacterized protein.
   
 0.997
NAV_LOCUS6019
WD_REPEATS_REGION domain-containing protein.
   
 0.997
NAV_LOCUS5356
Uncharacterized protein.
  
 0.996
NAV_LOCUS4676
WD_REPEATS_REGION domain-containing protein.
   
 0.996
Your Current Organism:
Acanthocheilonema viteae
NCBI taxonomy Id: 6277
Other names: A. viteae, Dipetalonema viteae
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.