NAV_LOCUS1826 protein (Acanthocheilonema viteae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NAV_LOCUS1826

Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (294 aa)

Predicted Functional Partners:

NAV_LOCUS7616

0.755

NAV_LOCUS5312

0.627

NAV_LOCUS3813

0.555

NAV_LOCUS3137

0.552

NAV_LOCUS5929

0.552

NAV_LOCUS4340

0.544

NAV_LOCUS2444

0.524

NAV_LOCUS7908

0.514

NAV_LOCUS6237

0.502

NAV_LOCUS7254

0.499

Your Current Organism:

Acanthocheilonema viteae

NCBI taxonomy Id: 6277
Other names: A. viteae, Dipetalonema viteae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NAV_LOCUS1826	NAV_LOCUS2444	A0A498SAS0	A0A498SCV7	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Cytochrome c domain-containing protein.	0.524
NAV_LOCUS1826	NAV_LOCUS3137	A0A498SAS0	A0A498SE74	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.552
NAV_LOCUS1826	NAV_LOCUS3813	A0A498SAS0	A0A498SK01	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.555
NAV_LOCUS1826	NAV_LOCUS4340	A0A498SAS0	A0A498SET7	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.544
NAV_LOCUS1826	NAV_LOCUS5312	A0A498SAS0	A0A498SNY4	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the complex I 20 kDa subunit family.	0.627
NAV_LOCUS1826	NAV_LOCUS5929	A0A498SAS0	A0A498SMC1	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Plug_translocon domain-containing protein; Belongs to the membrane-bound acyltransferase family.	0.552
NAV_LOCUS1826	NAV_LOCUS6237	A0A498SAS0	A0A498SK70	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.502
NAV_LOCUS1826	NAV_LOCUS7254	A0A498SAS0	A0A498SN08	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.499
NAV_LOCUS1826	NAV_LOCUS7616	A0A498SAS0	A0A498SUB0	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Ribosomal_L12 domain-containing protein.	0.755
NAV_LOCUS1826	NAV_LOCUS7908	A0A498SAS0	A0A498SMX6	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.514
NAV_LOCUS2444	NAV_LOCUS1826	A0A498SCV7	A0A498SAS0	Cytochrome c domain-containing protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.524
NAV_LOCUS2444	NAV_LOCUS5312	A0A498SCV7	A0A498SNY4	Cytochrome c domain-containing protein.	Uncharacterized protein; Belongs to the complex I 20 kDa subunit family.	0.999
NAV_LOCUS2444	NAV_LOCUS6237	A0A498SCV7	A0A498SK70	Cytochrome c domain-containing protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.842
NAV_LOCUS2444	NAV_LOCUS7254	A0A498SCV7	A0A498SN08	Cytochrome c domain-containing protein.	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.629
NAV_LOCUS2444	NAV_LOCUS7616	A0A498SCV7	A0A498SUB0	Cytochrome c domain-containing protein.	Ribosomal_L12 domain-containing protein.	0.622
NAV_LOCUS2444	NAV_LOCUS7908	A0A498SCV7	A0A498SMX6	Cytochrome c domain-containing protein.	Uncharacterized protein.	0.981
NAV_LOCUS3137	NAV_LOCUS1826	A0A498SE74	A0A498SAS0	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.552
NAV_LOCUS3813	NAV_LOCUS1826	A0A498SK01	A0A498SAS0	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.555
NAV_LOCUS3813	NAV_LOCUS5312	A0A498SK01	A0A498SNY4	Uncharacterized protein.	Uncharacterized protein; Belongs to the complex I 20 kDa subunit family.	0.617
NAV_LOCUS4340	NAV_LOCUS1826	A0A498SET7	A0A498SAS0	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.544