NAV_LOCUS831 protein (Acanthocheilonema viteae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NAV_LOCUS831

MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (921 aa)

Predicted Functional Partners:

NAV_LOCUS269

0.999

NAV_LOCUS3397

0.999

NAV_LOCUS6822

0.999

NAV_LOCUS944

0.987

NAV_LOCUS5229

0.986

NAV_LOCUS3680

0.980

NAV_LOCUS5533

0.980

NAV_LOCUS1719

0.977

NAV_LOCUS7891

0.969

NAV_LOCUS4711

0.966

Your Current Organism:

Acanthocheilonema viteae

NCBI taxonomy Id: 6277
Other names: A. viteae, Dipetalonema viteae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NAV_LOCUS1719	NAV_LOCUS269	A0A498S808	A0A498S1W3	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.963
NAV_LOCUS1719	NAV_LOCUS3397	A0A498S808	A0A498S5C0	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP complex subunit beta.	0.997
NAV_LOCUS1719	NAV_LOCUS3680	A0A498S808	A0A498SD40	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Tudor domain-containing protein.	0.829
NAV_LOCUS1719	NAV_LOCUS4711	A0A498S808	A0A498SJ16	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Adaptin_N domain-containing protein.	0.891
NAV_LOCUS1719	NAV_LOCUS5229	A0A498S808	A0A498SFG5	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Uncharacterized protein.	0.999
NAV_LOCUS1719	NAV_LOCUS5533	A0A498S808	A0A498SGA2	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Uncharacterized protein.	0.830
NAV_LOCUS1719	NAV_LOCUS6822	A0A498S808	A0A498SPV9	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.984
NAV_LOCUS1719	NAV_LOCUS7891	A0A498S808	A0A498SUZ3	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.999
NAV_LOCUS1719	NAV_LOCUS831	A0A498S808	A0A498SBU3	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.977
NAV_LOCUS1719	NAV_LOCUS944	A0A498S808	A0A498RZ25	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	DUF1681 domain-containing protein.	0.834
NAV_LOCUS269	NAV_LOCUS1719	A0A498S1W3	A0A498S808	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.963
NAV_LOCUS269	NAV_LOCUS3397	A0A498S1W3	A0A498S5C0	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP complex subunit beta.	0.996
NAV_LOCUS269	NAV_LOCUS3680	A0A498S1W3	A0A498SD40	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Tudor domain-containing protein.	0.937
NAV_LOCUS269	NAV_LOCUS4711	A0A498S1W3	A0A498SJ16	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Adaptin_N domain-containing protein.	0.962
NAV_LOCUS269	NAV_LOCUS5229	A0A498S1W3	A0A498SFG5	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Uncharacterized protein.	0.885
NAV_LOCUS269	NAV_LOCUS5533	A0A498S1W3	A0A498SGA2	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Uncharacterized protein.	0.937
NAV_LOCUS269	NAV_LOCUS6822	A0A498S1W3	A0A498SPV9	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.999
NAV_LOCUS269	NAV_LOCUS7891	A0A498S1W3	A0A498SUZ3	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.959
NAV_LOCUS269	NAV_LOCUS831	A0A498S1W3	A0A498SBU3	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.999
NAV_LOCUS269	NAV_LOCUS944	A0A498S1W3	A0A498RZ25	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	DUF1681 domain-containing protein.	0.930