STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAV_LOCUS4081Uncharacterized protein. (605 aa)    
Predicted Functional Partners:
NAV_LOCUS1818
Uncharacterized protein.
   
 0.998
NAV_LOCUS2981
DUF3677 domain-containing protein.
    
 0.998
NAV_LOCUS4872
Beta-Casp domain-containing protein.
    
 0.998
NAV_LOCUS4717
Uncharacterized protein.
    
 0.995
NAV_LOCUS955
Uncharacterized protein.
    
 0.991
NAV_LOCUS2985
Uncharacterized protein.
   
 0.980
NAV_LOCUS8634
VWFA domain-containing protein.
   
 0.973
NAV_LOCUS6185
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.965
NAV_LOCUS1445
Uncharacterized protein.
   
 0.961
NAV_LOCUS1873
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
  
  0.961
Your Current Organism:
Acanthocheilonema viteae
NCBI taxonomy Id: 6277
Other names: A. viteae, Dipetalonema viteae
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