NAV_LOCUS4331 protein (Acanthocheilonema viteae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NAV_LOCUS4331

Myb-like domain-containing protein. (965 aa)

Predicted Functional Partners:

NAV_LOCUS773

0.999

NAV_LOCUS891

0.999

NAV_LOCUS1950

0.999

NAV_LOCUS813

0.999

NAV_LOCUS2800

0.999

NAV_LOCUS1183

0.999

NAV_LOCUS4843

0.999

NAV_LOCUS5671

0.999

NAV_LOCUS5724

0.999

NAV_LOCUS5520

0.999

Your Current Organism:

Acanthocheilonema viteae

NCBI taxonomy Id: 6277
Other names: A. viteae, Dipetalonema viteae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NAV_LOCUS1183	NAV_LOCUS1950	A0A498SCX3	A0A498S6J9	Sas10 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.995
NAV_LOCUS1183	NAV_LOCUS2800	A0A498SCX3	A0A498S8G8	Sas10 domain-containing protein.	Nucleolar protein 6.	0.999
NAV_LOCUS1183	NAV_LOCUS4331	A0A498SCX3	A0A498SD32	Sas10 domain-containing protein.	Myb-like domain-containing protein.	0.999
NAV_LOCUS1183	NAV_LOCUS4843	A0A498SCX3	A0A498SDV0	Sas10 domain-containing protein.	Uncharacterized protein.	0.997
NAV_LOCUS1183	NAV_LOCUS5520	A0A498SCX3	A0A498SNF3	Sas10 domain-containing protein.	Uncharacterized protein.	0.999
NAV_LOCUS1183	NAV_LOCUS5671	A0A498SCX3	A0A498SGN9	Sas10 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
NAV_LOCUS1183	NAV_LOCUS5724	A0A498SCX3	A0A498SLZ4	Sas10 domain-containing protein.	Uncharacterized protein.	0.998
NAV_LOCUS1183	NAV_LOCUS773	A0A498SCX3	A0A498S2F3	Sas10 domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
NAV_LOCUS1183	NAV_LOCUS813	A0A498SCX3	A0A498S7M8	Sas10 domain-containing protein.	Uncharacterized protein.	0.999
NAV_LOCUS1183	NAV_LOCUS891	A0A498SCX3	A0A498S3U9	Sas10 domain-containing protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.992
NAV_LOCUS1950	NAV_LOCUS1183	A0A498S6J9	A0A498SCX3	WD_REPEATS_REGION domain-containing protein.	Sas10 domain-containing protein.	0.995
NAV_LOCUS1950	NAV_LOCUS2800	A0A498S6J9	A0A498S8G8	WD_REPEATS_REGION domain-containing protein.	Nucleolar protein 6.	0.990
NAV_LOCUS1950	NAV_LOCUS4331	A0A498S6J9	A0A498SD32	WD_REPEATS_REGION domain-containing protein.	Myb-like domain-containing protein.	0.999
NAV_LOCUS1950	NAV_LOCUS4843	A0A498S6J9	A0A498SDV0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
NAV_LOCUS1950	NAV_LOCUS5520	A0A498S6J9	A0A498SNF3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.997
NAV_LOCUS1950	NAV_LOCUS5671	A0A498S6J9	A0A498SGN9	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
NAV_LOCUS1950	NAV_LOCUS5724	A0A498S6J9	A0A498SLZ4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.986
NAV_LOCUS1950	NAV_LOCUS773	A0A498S6J9	A0A498S2F3	WD_REPEATS_REGION domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.998
NAV_LOCUS1950	NAV_LOCUS813	A0A498S6J9	A0A498S7M8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.995
NAV_LOCUS1950	NAV_LOCUS891	A0A498S6J9	A0A498S3U9	WD_REPEATS_REGION domain-containing protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.974