STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAV_LOCUS1892Uncharacterized protein. (137 aa)    
Predicted Functional Partners:
NAV_LOCUS6434
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.999
NAV_LOCUS6951
Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.
   
 0.989
NAV_LOCUS4407
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
   
 0.988
NAV_LOCUS5300
Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.
   
 0.986
NAV_LOCUS1879
Ribosomal_L18_c domain-containing protein.
   
 0.985
NAV_LOCUS2100
Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.
   
 0.985
NAV_LOCUS804
Uncharacterized protein.
   
 0.985
NAV_LOCUS5740
Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.
   
 0.985
NAV_LOCUS5245
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
   
 0.985
NAV_LOCUS5800
Ribosomal_L14e domain-containing protein.
   
 0.985
Your Current Organism:
Acanthocheilonema viteae
NCBI taxonomy Id: 6277
Other names: A. viteae, Dipetalonema viteae
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