NAV_LOCUS6159 protein (Acanthocheilonema viteae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NAV_LOCUS6159

Uncharacterized protein; Belongs to the histidine acid phosphatase family. (378 aa)

Predicted Functional Partners:

NAV_LOCUS3538

0.705

NAV_LOCUS504

0.677

NAV_LOCUS6126

0.654

NAV_LOCUS1986

0.598

NAV_LOCUS8031

0.575

NAV_LOCUS6471

0.535

NAV_LOCUS4622

0.479

NAV_LOCUS6294

0.473

NAV_LOCUS9589

0.473

NAV_LOCUS9274

0.473

Your Current Organism:

Acanthocheilonema viteae

NCBI taxonomy Id: 6277
Other names: A. viteae, Dipetalonema viteae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NAV_LOCUS1986	NAV_LOCUS6159	A0A498SAT0	A0A498SGM5	Purple acid phosphatase.	Uncharacterized protein; Belongs to the histidine acid phosphatase family.	0.598
NAV_LOCUS1986	NAV_LOCUS6294	A0A498SAT0	A0A498SI28	Purple acid phosphatase.	LMWPc domain-containing protein.	0.550
NAV_LOCUS1986	NAV_LOCUS8031	A0A498SAT0	A0A498ST89	Purple acid phosphatase.	Uncharacterized protein; Belongs to the histidine acid phosphatase family.	0.607
NAV_LOCUS1986	NAV_LOCUS9274	A0A498SAT0	A0A498SZV1	Purple acid phosphatase.	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	0.550
NAV_LOCUS1986	NAV_LOCUS9589	A0A498SAT0	A0A498SUU9	Purple acid phosphatase.	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	0.550
NAV_LOCUS3538	NAV_LOCUS504	A0A498SFG2	A0A498S2Y1	Uncharacterized protein.	Protein kinase domain-containing protein.	0.784
NAV_LOCUS3538	NAV_LOCUS6126	A0A498SFG2	A0A498SR94	Uncharacterized protein.	Serine/threonine-protein kinase PLK.	0.800
NAV_LOCUS3538	NAV_LOCUS6159	A0A498SFG2	A0A498SGM5	Uncharacterized protein.	Uncharacterized protein; Belongs to the histidine acid phosphatase family.	0.705
NAV_LOCUS3538	NAV_LOCUS8031	A0A498SFG2	A0A498ST89	Uncharacterized protein.	Uncharacterized protein; Belongs to the histidine acid phosphatase family.	0.705
NAV_LOCUS4622	NAV_LOCUS6159	A0A498SFN7	A0A498SGM5	Uncharacterized protein.	Uncharacterized protein; Belongs to the histidine acid phosphatase family.	0.479
NAV_LOCUS4622	NAV_LOCUS8031	A0A498SFN7	A0A498ST89	Uncharacterized protein.	Uncharacterized protein; Belongs to the histidine acid phosphatase family.	0.479
NAV_LOCUS504	NAV_LOCUS3538	A0A498S2Y1	A0A498SFG2	Protein kinase domain-containing protein.	Uncharacterized protein.	0.784
NAV_LOCUS504	NAV_LOCUS6126	A0A498S2Y1	A0A498SR94	Protein kinase domain-containing protein.	Serine/threonine-protein kinase PLK.	0.919
NAV_LOCUS504	NAV_LOCUS6159	A0A498S2Y1	A0A498SGM5	Protein kinase domain-containing protein.	Uncharacterized protein; Belongs to the histidine acid phosphatase family.	0.677
NAV_LOCUS504	NAV_LOCUS8031	A0A498S2Y1	A0A498ST89	Protein kinase domain-containing protein.	Uncharacterized protein; Belongs to the histidine acid phosphatase family.	0.675
NAV_LOCUS6126	NAV_LOCUS3538	A0A498SR94	A0A498SFG2	Serine/threonine-protein kinase PLK.	Uncharacterized protein.	0.800
NAV_LOCUS6126	NAV_LOCUS504	A0A498SR94	A0A498S2Y1	Serine/threonine-protein kinase PLK.	Protein kinase domain-containing protein.	0.919
NAV_LOCUS6126	NAV_LOCUS6159	A0A498SR94	A0A498SGM5	Serine/threonine-protein kinase PLK.	Uncharacterized protein; Belongs to the histidine acid phosphatase family.	0.654
NAV_LOCUS6126	NAV_LOCUS6471	A0A498SR94	A0A498SKU9	Serine/threonine-protein kinase PLK.	Uncharacterized protein.	0.644
NAV_LOCUS6126	NAV_LOCUS8031	A0A498SR94	A0A498ST89	Serine/threonine-protein kinase PLK.	Uncharacterized protein; Belongs to the histidine acid phosphatase family.	0.654