NAV_LOCUS6495 protein (Acanthocheilonema viteae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NAV_LOCUS6495

Uridine kinase; Belongs to the uridine kinase family. (543 aa)

Predicted Functional Partners:

NAV_LOCUS1829

0.991

NAV_LOCUS6140

0.943

NAV_LOCUS146

0.941

NAV_LOCUS145

0.941

NAV_LOCUS8846

0.936

NAV_LOCUS5547

0.934

NAV_LOCUS5940

0.933

NAV_LOCUS8869

0.884

NAV_LOCUS1287

0.874

NAV_LOCUS4147

0.873

Your Current Organism:

Acanthocheilonema viteae

NCBI taxonomy Id: 6277
Other names: A. viteae, Dipetalonema viteae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NAV_LOCUS1287	NAV_LOCUS145	A0A498S8Y4	A0A498S214	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family.	Guanylate kinase-like domain-containing protein.	0.736
NAV_LOCUS1287	NAV_LOCUS146	A0A498S8Y4	A0A498RX71	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family.	Uncharacterized protein.	0.736
NAV_LOCUS1287	NAV_LOCUS4147	A0A498S8Y4	A0A498SCL5	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family.	UMP-CMP kinase; Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors; Belongs to the adenylate kinase family. UMP-CMP kinase subfamily.	0.837
NAV_LOCUS1287	NAV_LOCUS5940	A0A498S8Y4	A0A498SH51	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family.	Multifunctional fusion protein; Belongs to the uridine kinase family.	0.851
NAV_LOCUS1287	NAV_LOCUS6140	A0A498S8Y4	A0A498SQB5	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family.	OMPdecase domain-containing protein.	0.835
NAV_LOCUS1287	NAV_LOCUS6495	A0A498S8Y4	A0A498SHG8	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family.	Uridine kinase; Belongs to the uridine kinase family.	0.874
NAV_LOCUS145	NAV_LOCUS1287	A0A498S214	A0A498S8Y4	Guanylate kinase-like domain-containing protein.	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family.	0.736
NAV_LOCUS145	NAV_LOCUS146	A0A498S214	A0A498RX71	Guanylate kinase-like domain-containing protein.	Uncharacterized protein.	0.954
NAV_LOCUS145	NAV_LOCUS4147	A0A498S214	A0A498SCL5	Guanylate kinase-like domain-containing protein.	UMP-CMP kinase; Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors; Belongs to the adenylate kinase family. UMP-CMP kinase subfamily.	0.762
NAV_LOCUS145	NAV_LOCUS5940	A0A498S214	A0A498SH51	Guanylate kinase-like domain-containing protein.	Multifunctional fusion protein; Belongs to the uridine kinase family.	0.941
NAV_LOCUS145	NAV_LOCUS6140	A0A498S214	A0A498SQB5	Guanylate kinase-like domain-containing protein.	OMPdecase domain-containing protein.	0.481
NAV_LOCUS145	NAV_LOCUS6495	A0A498S214	A0A498SHG8	Guanylate kinase-like domain-containing protein.	Uridine kinase; Belongs to the uridine kinase family.	0.941
NAV_LOCUS145	NAV_LOCUS8846	A0A498S214	A0A498SVB2	Guanylate kinase-like domain-containing protein.	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	0.420
NAV_LOCUS146	NAV_LOCUS1287	A0A498RX71	A0A498S8Y4	Uncharacterized protein.	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family.	0.736
NAV_LOCUS146	NAV_LOCUS145	A0A498RX71	A0A498S214	Uncharacterized protein.	Guanylate kinase-like domain-containing protein.	0.954
NAV_LOCUS146	NAV_LOCUS4147	A0A498RX71	A0A498SCL5	Uncharacterized protein.	UMP-CMP kinase; Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors; Belongs to the adenylate kinase family. UMP-CMP kinase subfamily.	0.762
NAV_LOCUS146	NAV_LOCUS5940	A0A498RX71	A0A498SH51	Uncharacterized protein.	Multifunctional fusion protein; Belongs to the uridine kinase family.	0.941
NAV_LOCUS146	NAV_LOCUS6140	A0A498RX71	A0A498SQB5	Uncharacterized protein.	OMPdecase domain-containing protein.	0.481
NAV_LOCUS146	NAV_LOCUS6495	A0A498RX71	A0A498SHG8	Uncharacterized protein.	Uridine kinase; Belongs to the uridine kinase family.	0.941
NAV_LOCUS146	NAV_LOCUS8846	A0A498RX71	A0A498SVB2	Uncharacterized protein.	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	0.420