STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAV_LOCUS8254Caprin-1_dimer domain-containing protein. (515 aa)    
Predicted Functional Partners:
NAV_LOCUS5851
Uncharacterized protein.
    
 
 0.723
NAV_LOCUS5422
Uncharacterized protein.
   
 
 0.688
NAV_LOCUS2278
Uncharacterized protein.
      
 0.615
NAV_LOCUS7200
Uncharacterized protein.
   
  0.597
NAV_LOCUS9609
Neur_chan_LBD domain-containing protein.
   
  0.597
NAV_LOCUS9483
Neur_chan_LBD domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
   
  0.597
NAV_LOCUS8461
Uncharacterized protein.
   
  0.597
NAV_LOCUS8679
Uncharacterized protein.
   
  0.597
NAV_LOCUS8476
Uncharacterized protein.
   
 
 0.594
NAV_LOCUS891
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
  
 0.583
Your Current Organism:
Acanthocheilonema viteae
NCBI taxonomy Id: 6277
Other names: A. viteae, Dipetalonema viteae
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