Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NAV_LOCUS5679Uncharacterized protein. (253 aa)    
Predicted Functional Partners:
NAV_LOCUS8021
CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.
    
 0.997
NAV_LOCUS764
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
    
 0.986
NAV_LOCUS6741
Uncharacterized protein.
     
 0.980
NAV_LOCUS2678
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
   0.885
NAV_LOCUS4869
USP domain-containing protein; Belongs to the peptidase C19 family.
     
 0.869
NAV_LOCUS7763
t-SNARE coiled-coil homology domain-containing protein.
    
   0.810
NAV_LOCUS9051
Gelsolin-like domain-containing protein.
    
   0.805
NAV_LOCUS7224
Uncharacterized protein.
    
   0.805
NAV_LOCUS248
Uncharacterized protein.
    
 0.743
NAV_LOCUS7243
Uncharacterized protein.
    
 0.743
Your Current Organism:
Acanthocheilonema viteae
NCBI taxonomy Id: 6277
Other names: A. viteae, Dipetalonema viteae
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