NAV_LOCUS4150 protein (Acanthocheilonema viteae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NAV_LOCUS4150

RING-type domain-containing protein. (140 aa)

Predicted Functional Partners:

NAV_LOCUS5285

0.910

NAV_LOCUS9859

0.775

NAV_LOCUS7391

0.675

NAV_LOCUS9108

0.666

NAV_LOCUS3613

0.653

NAV_LOCUS3147

0.648

NAV_LOCUS5805

0.641

NAV_LOCUS5300

0.635

NAV_LOCUS4547

0.632

NAV_LOCUS8409

0.625

Your Current Organism:

Acanthocheilonema viteae

NCBI taxonomy Id: 6277
Other names: A. viteae, Dipetalonema viteae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NAV_LOCUS3147	NAV_LOCUS3613	A0A498SE83	A0A498SFV6	Uncharacterized protein.	U-box domain-containing protein.	0.876
NAV_LOCUS3147	NAV_LOCUS4150	A0A498SE83	A0A498SJN7	Uncharacterized protein.	RING-type domain-containing protein.	0.648
NAV_LOCUS3147	NAV_LOCUS4547	A0A498SE83	A0A498SCZ9	Uncharacterized protein.	Uncharacterized protein.	0.941
NAV_LOCUS3147	NAV_LOCUS5300	A0A498SE83	A0A498SAM4	Uncharacterized protein.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.985
NAV_LOCUS3147	NAV_LOCUS5805	A0A498SE83	A0A498SM65	Uncharacterized protein.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.942
NAV_LOCUS3147	NAV_LOCUS7391	A0A498SE83	A0A498SRM1	Uncharacterized protein.	Uncharacterized protein.	0.648
NAV_LOCUS3147	NAV_LOCUS9108	A0A498SE83	A0A498SZF9	Uncharacterized protein.	Uncharacterized protein.	0.426
NAV_LOCUS3147	NAV_LOCUS9859	A0A498SE83	A0A498SRX8	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.999
NAV_LOCUS3613	NAV_LOCUS3147	A0A498SFV6	A0A498SE83	U-box domain-containing protein.	Uncharacterized protein.	0.876
NAV_LOCUS3613	NAV_LOCUS4150	A0A498SFV6	A0A498SJN7	U-box domain-containing protein.	RING-type domain-containing protein.	0.653
NAV_LOCUS3613	NAV_LOCUS5805	A0A498SFV6	A0A498SM65	U-box domain-containing protein.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.724
NAV_LOCUS3613	NAV_LOCUS7391	A0A498SFV6	A0A498SRM1	U-box domain-containing protein.	Uncharacterized protein.	0.653
NAV_LOCUS3613	NAV_LOCUS9859	A0A498SFV6	A0A498SRX8	U-box domain-containing protein.	Ubiquitin-like domain-containing protein.	0.721
NAV_LOCUS4150	NAV_LOCUS3147	A0A498SJN7	A0A498SE83	RING-type domain-containing protein.	Uncharacterized protein.	0.648
NAV_LOCUS4150	NAV_LOCUS3613	A0A498SJN7	A0A498SFV6	RING-type domain-containing protein.	U-box domain-containing protein.	0.653
NAV_LOCUS4150	NAV_LOCUS4547	A0A498SJN7	A0A498SCZ9	RING-type domain-containing protein.	Uncharacterized protein.	0.632
NAV_LOCUS4150	NAV_LOCUS5285	A0A498SJN7	A0A498SMT2	RING-type domain-containing protein.	Uncharacterized protein.	0.910
NAV_LOCUS4150	NAV_LOCUS5300	A0A498SJN7	A0A498SAM4	RING-type domain-containing protein.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.635
NAV_LOCUS4150	NAV_LOCUS5805	A0A498SJN7	A0A498SM65	RING-type domain-containing protein.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.641
NAV_LOCUS4150	NAV_LOCUS7391	A0A498SJN7	A0A498SRM1	RING-type domain-containing protein.	Uncharacterized protein.	0.675