STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAV_LOCUS5121PX domain-containing protein. (504 aa)    
Predicted Functional Partners:
NAV_LOCUS8054
Uncharacterized protein.
    
   0.737
NAV_LOCUS5131
Sulfotransfer_1 domain-containing protein.
    
 
 0.710
NAV_LOCUS7367
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
 
 0.625
NAV_LOCUS90
PX domain-containing protein.
   
 
 0.550
NAV_LOCUS1861
FERM_M domain-containing protein.
    
 
 0.547
NAV_LOCUS5160
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.524
NAV_LOCUS4786
PX domain-containing protein.
    
 
 0.523
NAV_LOCUS7370
PX domain-containing protein.
    
 
 0.492
NAV_LOCUS7325
PPM-type phosphatase domain-containing protein.
    
   0.431
NAV_LOCUS8658
Uncharacterized protein.
    
   0.431
Your Current Organism:
Acanthocheilonema viteae
NCBI taxonomy Id: 6277
Other names: A. viteae, Dipetalonema viteae
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