NAV_LOCUS4710 protein (Acanthocheilonema viteae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NAV_LOCUS4710

CS domain-containing protein. (428 aa)

Predicted Functional Partners:

NAV_LOCUS3261

0.998

NAV_LOCUS7184

0.980

NAV_LOCUS1002

0.972

NAV_LOCUS8669

0.836

NAV_LOCUS3347

0.788

NAV_LOCUS8213

0.761

NAV_LOCUS2014

0.690

NAV_LOCUS9035

0.653

NAV_LOCUS9097

0.653

NAV_LOCUS8750

0.620

Your Current Organism:

Acanthocheilonema viteae

NCBI taxonomy Id: 6277
Other names: A. viteae, Dipetalonema viteae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NAV_LOCUS1002	NAV_LOCUS2014	A0A498S8N6	A0A498S1P3	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	Nop domain-containing protein.	0.982
NAV_LOCUS1002	NAV_LOCUS3261	A0A498S8N6	A0A498SH46	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	PUA domain-containing protein.	0.999
NAV_LOCUS1002	NAV_LOCUS3347	A0A498S8N6	A0A498S573	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	DNA helicase; Belongs to the RuvB family.	0.502
NAV_LOCUS1002	NAV_LOCUS4710	A0A498S8N6	A0A498SLB4	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	CS domain-containing protein.	0.972
NAV_LOCUS1002	NAV_LOCUS7184	A0A498S8N6	A0A498SUF4	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	TruB_N domain-containing protein.	0.991
NAV_LOCUS1002	NAV_LOCUS8669	A0A498S8N6	A0A498SQ20	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	Ribosomal_L7Ae domain-containing protein.	0.999
NAV_LOCUS1002	NAV_LOCUS8750	A0A498S8N6	A0A498SYK4	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	Nop domain-containing protein.	0.976
NAV_LOCUS2014	NAV_LOCUS1002	A0A498S1P3	A0A498S8N6	Nop domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.982
NAV_LOCUS2014	NAV_LOCUS3261	A0A498S1P3	A0A498SH46	Nop domain-containing protein.	PUA domain-containing protein.	0.999
NAV_LOCUS2014	NAV_LOCUS3347	A0A498S1P3	A0A498S573	Nop domain-containing protein.	DNA helicase; Belongs to the RuvB family.	0.982
NAV_LOCUS2014	NAV_LOCUS4710	A0A498S1P3	A0A498SLB4	Nop domain-containing protein.	CS domain-containing protein.	0.690
NAV_LOCUS2014	NAV_LOCUS7184	A0A498S1P3	A0A498SUF4	Nop domain-containing protein.	TruB_N domain-containing protein.	0.986
NAV_LOCUS2014	NAV_LOCUS8669	A0A498S1P3	A0A498SQ20	Nop domain-containing protein.	Ribosomal_L7Ae domain-containing protein.	0.997
NAV_LOCUS2014	NAV_LOCUS8750	A0A498S1P3	A0A498SYK4	Nop domain-containing protein.	Nop domain-containing protein.	0.999
NAV_LOCUS2014	NAV_LOCUS9035	A0A498S1P3	A0A498SQH7	Nop domain-containing protein.	RuvB-like helicase.	0.946
NAV_LOCUS2014	NAV_LOCUS9097	A0A498S1P3	A0A498ST62	Nop domain-containing protein.	RuvB-like helicase.	0.946
NAV_LOCUS3261	NAV_LOCUS1002	A0A498SH46	A0A498S8N6	PUA domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.999
NAV_LOCUS3261	NAV_LOCUS2014	A0A498SH46	A0A498S1P3	PUA domain-containing protein.	Nop domain-containing protein.	0.999
NAV_LOCUS3261	NAV_LOCUS3347	A0A498SH46	A0A498S573	PUA domain-containing protein.	DNA helicase; Belongs to the RuvB family.	0.959
NAV_LOCUS3261	NAV_LOCUS4710	A0A498SH46	A0A498SLB4	PUA domain-containing protein.	CS domain-containing protein.	0.998