NAV_LOCUS7452 protein (Acanthocheilonema viteae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NAV_LOCUS7452

GHMP_kinases_N domain-containing protein. (375 aa)

Predicted Functional Partners:

NAV_LOCUS7037

0.955

NAV_LOCUS7036

0.950

NAV_LOCUS5514

0.940

NAV_LOCUS5557

0.912

NAV_LOCUS8550

0.909

NAV_LOCUS6106

0.879

NAV_LOCUS3936

0.843

NAV_LOCUS4277

0.765

NAV_LOCUS7887

0.756

NAV_LOCUS6512

0.717

Your Current Organism:

Acanthocheilonema viteae

NCBI taxonomy Id: 6277
Other names: A. viteae, Dipetalonema viteae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NAV_LOCUS3936	NAV_LOCUS4277	A0A498SDR8	A0A498SEN1	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Citrate synthase; Belongs to the citrate synthase family.	0.950
NAV_LOCUS3936	NAV_LOCUS5514	A0A498SDR8	A0A498SB56	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxy-3-methylglutaryl coenzyme A reductase.	0.599
NAV_LOCUS3936	NAV_LOCUS5557	A0A498SDR8	A0A498SPW6	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.999
NAV_LOCUS3936	NAV_LOCUS6106	A0A498SDR8	A0A498SR83	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.881
NAV_LOCUS3936	NAV_LOCUS6512	A0A498SDR8	A0A498SSK2	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	ATP-citrate synthase; In the C-terminal section; belongs to the succinate/malate CoA ligase alpha subunit family.	0.901
NAV_LOCUS3936	NAV_LOCUS7036	A0A498SDR8	A0A498SQE8	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	MDD_C domain-containing protein.	0.571
NAV_LOCUS3936	NAV_LOCUS7037	A0A498SDR8	A0A498SK71	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Diphosphomevalonate decarboxylase.	0.571
NAV_LOCUS3936	NAV_LOCUS7452	A0A498SDR8	A0A498SLK9	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	GHMP_kinases_N domain-containing protein.	0.843
NAV_LOCUS3936	NAV_LOCUS7887	A0A498SDR8	A0A498SWB4	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.999
NAV_LOCUS4277	NAV_LOCUS3936	A0A498SEN1	A0A498SDR8	Citrate synthase; Belongs to the citrate synthase family.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.950
NAV_LOCUS4277	NAV_LOCUS5557	A0A498SEN1	A0A498SPW6	Citrate synthase; Belongs to the citrate synthase family.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.890
NAV_LOCUS4277	NAV_LOCUS6106	A0A498SEN1	A0A498SR83	Citrate synthase; Belongs to the citrate synthase family.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.963
NAV_LOCUS4277	NAV_LOCUS6512	A0A498SEN1	A0A498SSK2	Citrate synthase; Belongs to the citrate synthase family.	ATP-citrate synthase; In the C-terminal section; belongs to the succinate/malate CoA ligase alpha subunit family.	0.997
NAV_LOCUS4277	NAV_LOCUS7452	A0A498SEN1	A0A498SLK9	Citrate synthase; Belongs to the citrate synthase family.	GHMP_kinases_N domain-containing protein.	0.765
NAV_LOCUS4277	NAV_LOCUS7887	A0A498SEN1	A0A498SWB4	Citrate synthase; Belongs to the citrate synthase family.	Uncharacterized protein.	0.965
NAV_LOCUS5514	NAV_LOCUS3936	A0A498SB56	A0A498SDR8	3-hydroxy-3-methylglutaryl coenzyme A reductase.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.599
NAV_LOCUS5514	NAV_LOCUS5557	A0A498SB56	A0A498SPW6	3-hydroxy-3-methylglutaryl coenzyme A reductase.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.999
NAV_LOCUS5514	NAV_LOCUS6106	A0A498SB56	A0A498SR83	3-hydroxy-3-methylglutaryl coenzyme A reductase.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.792
NAV_LOCUS5514	NAV_LOCUS6512	A0A498SB56	A0A498SSK2	3-hydroxy-3-methylglutaryl coenzyme A reductase.	ATP-citrate synthase; In the C-terminal section; belongs to the succinate/malate CoA ligase alpha subunit family.	0.409
NAV_LOCUS5514	NAV_LOCUS7036	A0A498SB56	A0A498SQE8	3-hydroxy-3-methylglutaryl coenzyme A reductase.	MDD_C domain-containing protein.	0.898